SMTL ID : 8i3f.1

Crystal structure of Rco1-Eaf3 with peptide of histone H3 N-terminal

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ALA- ARG- THR- LYS- GLN- THR: Histone H3(Non-covalent)

ALA-ARG-THR-LYS-GLN-THR.1: 16 residues within 4Å: Chain B: N.2, E.3, D.4, S.12, G.13, S.14, F.15, L.16, C.17, C.18, D.19, F.27, P.40, K.41, G.42, W.44 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:L.16, B:F.27, B:W.44 Hydrogen bonds: B:N.2, B:N.2, B:N.2, B:G.13, B:G.13, B:S.14, B:F.15, B:F.15, B:C.17, B:G.42 Water bridges: B:D.19, B:D.43 Salt bridges: B:D.19

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain B: C.6, C.9, H.26, C.29 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.6, B:C.9, B:H.26, B:C.29 ZN.3: 4 residues within 4Å: Chain B: C.18, C.21, C.46, C.49 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.18, B:C.21, B:C.46, B:C.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Z. et al., Molecular basis for Eaf3-mediated assembly of Rpd3S and NuA4. Cell Discov (2023)

Release Date

2023-05-31

Peptides

Chromatin modification-related protein EAF3: A
RCO1 isoform 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Chromatin modification-related protein EAF3

RCO1 isoform 1