SMTL ID : 8i5h.2 (2 other biounits)

Crystal structure of SARS-CoV-2 delta variant spike receptor-binding domain (RBD) in complex with NCV2SG48 Fab

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.38 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: F.5, G.6, N.10, V.34, L.35 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.35 Hydrogen bonds: A:N.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shitaoka, K. et al., Structural basis of spike RBM-specific human antibodies counteracting broad SARS-CoV-2 variants. Commun Biol (2023)

Release Date

2023-04-19

Peptides

Spike protein S1: A
Fab Heavy chain: B
Fab Light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Spike protein S1

Fab Heavy chain

Fab Light chain

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