- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.40 Å
- Oligo State
- monomer
- Ligands
- 1 x BGC- BGC: beta-D-glucopyranose-(1-3)-beta-D-glucopyranose(Non-covalent)
- 16 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 5 residues within 4Å:- Chain A: I.50, F.428, D.429, Y.498
- Ligands: EDO.20
Ligand excluded by PLIPGOL.3: 4 residues within 4Å:- Chain A: K.160, K.181, E.368, D.372
Ligand excluded by PLIPGOL.4: 4 residues within 4Å:- Chain A: G.347, K.348, N.349, N.352
Ligand excluded by PLIPGOL.5: 8 residues within 4Å:- Chain A: W.580, S.581, F.639, S.643, D.644, H.645, D.707, S.709
Ligand excluded by PLIPGOL.6: 7 residues within 4Å:- Chain A: Y.170, W.406, N.419, N.420, D.452, I.453, Q.456
Ligand excluded by PLIPGOL.7: 3 residues within 4Å:- Chain A: K.550, T.551, D.554
Ligand excluded by PLIPGOL.8: 5 residues within 4Å:- Chain A: Y.88, T.89, T.90, Y.92, Y.114
Ligand excluded by PLIPGOL.9: 4 residues within 4Å:- Chain A: I.222, K.223, D.224, F.354
Ligand excluded by PLIPGOL.10: 5 residues within 4Å:- Chain A: K.223, E.230, I.262, Y.264, N.289
Ligand excluded by PLIPGOL.11: 9 residues within 4Å:- Chain A: D.562, D.564, D.568, G.584, T.585, E.630, T.641, E.642
- Ligands: CA.18
Ligand excluded by PLIPGOL.12: 8 residues within 4Å:- Chain A: N.419, M.421, Q.456, R.459, Q.460, D.463, Y.544
- Ligands: GOL.14
Ligand excluded by PLIPGOL.13: 8 residues within 4Å:- Chain A: W.29, T.30, I.31, E.35, F.37, Y.749, K.751, W.757
Ligand excluded by PLIPGOL.14: 4 residues within 4Å:- Chain A: R.417, T.418, N.419
- Ligands: GOL.12
Ligand excluded by PLIPGOL.15: 6 residues within 4Å:- Chain A: V.467, D.469, K.484, I.503, K.504, I.505
Ligand excluded by PLIPGOL.16: 5 residues within 4Å:- Chain A: I.166, P.167, Y.168, N.169, M.370
Ligand excluded by PLIPGOL.17: 5 residues within 4Å:- Chain A: I.378, M.448, L.449, W.782, E.785
Ligand excluded by PLIP- 1 x CA: CALCIUM ION(Non-covalent)
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.19: 9 residues within 4Å:- Chain A: G.66, T.67, H.80, I.83, A.400, D.401, G.402, G.403, T.404
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:H.80, A:D.401, A:G.403, A:T.404
- Water bridges: A:G.66, A:G.84
EDO.20: 6 residues within 4Å:- Chain A: D.429, Y.430, N.431, Y.432
- Ligands: BGC-BGC.1, GOL.2
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.431
- Water bridges: A:Y.432, A:Y.432
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pengthaisong, S. et al., Reaction Mechanism of Glycoside Hydrolase Family 116 Utilizes Perpendicular Protonation. Acs Catalysis (2023)
- Release Date
- 2023-05-03
- Peptides
- beta-glucosidase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.40 Å
- Oligo State
- monomer
- Ligands
- 1 x BGC- BGC: beta-D-glucopyranose-(1-3)-beta-D-glucopyranose(Non-covalent)
- 16 x GOL: GLYCEROL(Non-functional Binders)
- 1 x CA: CALCIUM ION(Non-covalent)
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pengthaisong, S. et al., Reaction Mechanism of Glycoside Hydrolase Family 116 Utilizes Perpendicular Protonation. Acs Catalysis (2023)
- Release Date
- 2023-05-03
- Peptides
- beta-glucosidase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A