SMTL ID : 8i9h.1

S-RBD (Omicron XBB.1) in complex with PD of ACE2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: N.54, T.56, E.58, N.59, Q.341 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 2 residues within 4Å: Chain A: K.27, N.91 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 2 residues within 4Å: Chain A: Q.82, N.104 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 3 residues within 4Å: Chain A: F.286, N.433, W.595 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 3 residues within 4Å: Chain A: S.421, S.546, N.547 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 2 residues within 4Å: Chain B: H.21, N.25 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 1 residues within 4Å: Chain A: N.323 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.323

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Y.N. et al., Structural basis for the enhanced infectivity and immune evasion of Omicron subvariants. To Be Published

Release Date

2024-02-07

Peptides

Processed angiotensin-converting enzyme 2: A
Spike protein S2': B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

Processed angiotensin-converting enzyme 2

Spike protein S2'

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