SMTL ID : 8ia5.1

Small peptide enhances the binding of nutline-3a to N-terminal domain of MdmX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

monomer

Ligands

1 x ASP- LEU- GLU- ASN- LEU- TYR- PHE- GLN- GLY: 9-mer peptide(Non-covalent)

ASP-LEU-GLU-ASN-LEU-TYR-PHE-GLN-GLY.1: 10 residues within 4Å: Chain A: V.28, K.29, M.32, H.33, G.36, P.74, L.77, Y.78, L.81 Ligands: NUT.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:M.32, A:Y.78, A:L.81 Hydrogen bonds: A:K.29, A:Y.78, A:Y.78, A:Y.78

1 x NUT: 4-({(4S,5R)-4,5-bis(4-chlorophenyl)-2-[4-methoxy-2-(propan-2-yloxy)phenyl]-4,5-dihydro-1H-imidazol-1-yl}carbonyl)piperazin-2-one(Non-covalent)

NUT.2: 19 residues within 4Å: Chain A: M.32, L.35, G.36, I.39, M.40, Y.45, Q.50, H.51, V.53, F.69, V.71, K.72, P.74, L.77, Y.78 Ligands: ASP-LEU-GLU-ASN-LEU-TYR-PHE-GLN-GLY.1, ASP-LEU-GLU-ASN-LEU-TYR-PHE-GLN-GLY.1, ASP-LEU-GLU-ASN-LEU-TYR-PHE-GLN-GLY.1, ASP-LEU-GLU-ASN-LEU-TYR-PHE-GLN-GLY.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.39, A:I.39, A:V.53, A:V.71, A:V.71, A:V.71 Water bridges: A:Q.37

1 x O4B: 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE(Non-covalent)

O4B.3: 4 residues within 4Å: Chain A: L.10, P.11, K.14, L.59 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheng, X.Y. et al., Small peptide enhances the binding of nutline-3a to N-terminal domain of MdmX. To Be Published

Release Date

2023-02-22

Peptides

Protein Mdm4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein Mdm4