Toggle navigation
Modelling
myWorkspace
Alignment Mode
User Template Mode
DeepView Project Mode
Modelling API
Template Library
Repository
SWISS-MODEL Repository
Repository API
3D-Beacons API
Annotation Projects
TBvar3D
Tools
Structure Assessment
Structure Comparison
QMEAN
Documentation
SWISS-MODEL
Examples
Video Tutorial
New Features
SWISS-MODEL Repository
QMEAN
Structure Assessment
Structure Comparison
TBvar3D
Protein Structure Course
References
Log in
Create Account
SMTL ID : 8iad.1
The Arabidopsis CLCa transporter bound with nitrate, ATP and PIP2
Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
homo-dimer
Ligands
2 x
ATP
:
ADENOSINE-5'-TRIPHOSPHATE
(Non-covalent)
ATP.1:
17 residues within 4Å:
Chain A:
E.55
,
S.56
,
K.596
,
P.598
,
V.599
,
V.600
,
T.619
,
H.620
,
N.621
,
A.622
,
R.729
,
H.730
,
I.748
,
T.750
,
Q.752
,
D.753
Ligands:
MG.2
14
PLIP interactions
:
14 interactions with chain A
Hydrogen bonds:
A:S.56
,
A:S.56
,
A:S.56
,
A:S.56
,
A:V.600
,
A:V.600
,
A:N.621
,
A:N.621
,
A:T.750
Salt bridges:
A:H.620
,
A:R.729
,
A:H.730
pi-Stacking:
A:H.620
,
A:H.620
ATP.6:
17 residues within 4Å:
Chain B:
E.55
,
S.56
,
K.596
,
P.598
,
V.599
,
V.600
,
T.619
,
H.620
,
N.621
,
A.622
,
R.729
,
H.730
,
I.748
,
T.750
,
Q.752
,
D.753
Ligands:
MG.7
14
PLIP interactions
:
14 interactions with chain B
Hydrogen bonds:
B:S.56
,
B:S.56
,
B:S.56
,
B:S.56
,
B:V.600
,
B:V.600
,
B:N.621
,
B:N.621
,
B:T.750
Salt bridges:
B:H.620
,
B:R.729
,
B:H.730
pi-Stacking:
B:H.620
,
B:H.620
2 x
MG
:
MAGNESIUM ION
(Non-covalent)
MG.2:
2 residues within 4Å:
Chain A:
E.55
Ligands:
ATP.1
2
PLIP interactions
:
2 interactions with chain A
Metal complexes:
A:E.55
,
A:E.55
MG.7:
2 residues within 4Å:
Chain B:
E.55
Ligands:
ATP.6
2
PLIP interactions
:
2 interactions with chain B
Metal complexes:
B:E.55
,
B:E.55
4 x
NO3
:
NITRATE ION
(Non-functional Binders)
NO3.3:
7 residues within 4Å:
Chain A:
P.160
,
I.162
,
P.163
,
F.471
,
L.479
,
M.522
,
Y.564
1
PLIP interactions
:
1 interactions with chain A
Hydrogen bonds:
A:Y.564
NO3.4:
5 residues within 4Å:
Chain A:
A.158
,
P.160
,
G.161
,
E.164
,
K.571
3
PLIP interactions
:
3 interactions with chain A
Hydrogen bonds:
A:G.161
,
A:K.571
,
A:K.571
NO3.8:
6 residues within 4Å:
Chain B:
P.160
,
I.162
,
F.471
,
L.479
,
M.522
,
Y.564
1
PLIP interactions
:
1 interactions with chain B
Hydrogen bonds:
B:Y.564
NO3.9:
5 residues within 4Å:
Chain B:
A.158
,
P.160
,
G.161
,
E.164
,
K.571
2
PLIP interactions
:
2 interactions with chain B
Hydrogen bonds:
B:K.571
,
B:K.571
2 x
PIO
:
[(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate
(Non-covalent)
PIO.5:
15 residues within 4Å:
Chain A:
W.71
,
R.72
,
I.83
,
F.84
,
K.86
,
W.87
,
R.276
,
A.278
,
W.281
,
R.282
,
F.285
Chain B:
L.550
,
I.551
,
T.554
,
N.579
15
PLIP interactions
:
11 interactions with chain A
,
4 interactions with chain B
Hydrophobic interactions:
A:F.84
,
A:W.87
,
A:F.285
,
B:L.550
,
B:I.551
Hydrogen bonds:
A:K.86
,
A:K.86
,
B:N.579
,
B:N.579
Salt bridges:
A:R.72
,
A:R.72
,
A:K.86
,
A:K.86
,
A:R.276
,
A:R.282
PIO.10:
16 residues within 4Å:
Chain A:
F.547
,
L.550
,
I.551
,
T.554
,
N.579
Chain B:
W.71
,
R.72
,
I.83
,
F.84
,
K.86
,
W.87
,
R.276
,
A.278
,
W.281
,
R.282
,
F.285
16
PLIP interactions
:
12 interactions with chain B
,
4 interactions with chain A
Hydrophobic interactions:
B:I.83
,
B:F.84
,
B:W.87
,
B:F.285
,
A:F.547
,
A:I.551
Hydrogen bonds:
B:K.86
,
B:K.86
,
A:N.579
,
A:N.579
Salt bridges:
B:R.72
,
B:R.72
,
B:K.86
,
B:K.86
,
B:R.276
,
B:R.282
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Yang, Z. et al., Molecular mechanism underlying regulation of Arabidopsis CLCa transporter by nucleotides and phospholipids. Nat Commun (2023)
Release Date
2023-08-02
Peptides
Chloride channel protein CLC-a:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
Membrane
We predict this structure to be a membrane protein.
Show / Hide
Export Alignment
FASTA format
Clustal Format
PNG Image
Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
Clustal
Hydrophobic
Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
Aromatic
No Colour
Background
3D Viewer
NGL
PV
2D
FASTA
Multi FASTA
ClustalW
PNG
Chloride channel protein CLC-a
Toggle Identical (AB)
Related Entries With Identical Sequence
8iab.1
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme