SMTL ID : 8ibn.1

Cryo-EM structure of KpFtsZ single filament

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x G2P: PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER(Non-covalent)

G2P.1: 19 residues within 4Å: Chain A: G.21, G.22, N.26, N.45, T.46, D.47, A.50, G.105, M.106, G.107, G.108, G.109, T.110, G.111, T.134, P.136, R.144, N.167, F.184 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.22, A:N.45, A:D.47, A:G.107, A:G.109, A:T.110, A:G.111, A:R.144, A:R.144, A:N.167, A:N.167 pi-Cation interactions: A:F.184 G2P.3: 19 residues within 4Å: Chain A: N.209 Chain B: G.22, G.23, N.45, T.46, D.47, A.50, G.105, M.106, G.107, G.108, G.109, T.110, G.111, T.134, P.136, R.144, N.167, F.184 14 PLIP interactions: 12 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:G.22, B:N.45, B:D.47, B:G.107, B:G.109, B:T.110, B:G.111, B:R.144, B:R.144, B:N.167, B:N.167, A:N.209, A:N.209 pi-Cation interactions: B:F.184 G2P.5: 19 residues within 4Å: Chain B: N.209 Chain C: G.22, G.23, N.45, T.46, D.47, A.50, G.105, M.106, G.107, G.108, G.109, T.110, G.111, T.134, P.136, R.144, N.167, F.184 14 PLIP interactions: 12 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:G.22, C:N.45, C:D.47, C:G.107, C:G.109, C:T.110, C:G.111, C:R.144, C:R.144, C:N.167, C:N.167, B:N.209, B:N.209 pi-Cation interactions: C:F.184 G2P.7: 19 residues within 4Å: Chain C: N.209 Chain D: G.22, G.23, N.45, T.46, D.47, A.50, G.105, M.106, G.107, G.108, G.109, T.110, G.111, T.134, P.136, R.144, N.167, F.184 17 PLIP interactions: 2 interactions with chain C, 15 interactions with chain D Hydrogen bonds: C:N.209, C:N.209, D:G.22, D:N.45, D:T.46, D:D.47, D:D.47, D:G.107, D:G.109, D:T.110, D:G.111, D:E.140, D:R.144, D:R.144, D:N.167, D:N.167 pi-Cation interactions: D:F.184

4 x K: POTASSIUM ION(Non-covalent)

K.2: 5 residues within 4Å: Chain A: L.201, I.202, R.204, N.209, V.210 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:L.201, A:R.204, A:V.210 K.4: 6 residues within 4Å: Chain B: L.201, I.202, R.204, N.209, V.210, D.211 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:L.201, B:R.204, B:V.210 K.6: 6 residues within 4Å: Chain C: L.201, I.202, R.204, N.209, V.210, D.211 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:L.201, C:R.204, C:V.210 K.8: 5 residues within 4Å: Chain D: L.201, I.202, R.204, N.209, V.210 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:L.201, D:R.204, D:V.210

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fujita, J. et al., Structures of a FtsZ single protofilament and a double-helical tube in complex with a monobody. Nat Commun (2023)

Release Date

2023-08-02

Peptides

Cell division protein FtsZ: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Cell division protein FtsZ

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