SMTL ID : 8ieg.1

Bre1(mRBD-RING)/Rad6-Ub/nucleosome complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-1-1-2-1-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain K: C.27, H.29, C.47, C.50 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.27, K:H.29, K:C.47, K:C.50 ZN.2: 4 residues within 4Å: Chain K: C.12, C.15, C.32, C.35 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.12, K:C.15, K:C.32, K:C.35 ZN.3: 4 residues within 4Å: Chain L: C.27, H.29, C.47, C.50 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.27, L:H.29, L:C.47, L:C.50 ZN.4: 4 residues within 4Å: Chain L: C.12, C.15, C.32, C.35 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.12, L:C.15, L:C.32, L:C.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Deng, Z. et al., Mechanistic insights into nucleosomal H2B monoubiquitylation mediated by yeast Bre1-Rad6 and its human homolog RNF20/RNF40-hRAD6A. Mol.Cell (2023)

Release Date

2023-09-06

Peptides

Histone H3.1: AE
Histone H4: BF
Histone H2A type 1-B/E: CG
Histone H2B type 1-K: D
Histone H2B type 1-K: H
E3 ubiquitin-protein ligase BRE1: KL
Ubiquitin-conjugating enzyme E2 2: M

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
K

E
E

B
L

F
F

C
C

G
G

D
D

H
H

K
A

L
B

M
R

Histone H3.1

Histone H4

Histone H2A type 1-B/E

Histone H2B type 1-K

Histone H2B type 1-K

E3 ubiquitin-protein ligase BRE1

Ubiquitin-conjugating enzyme E2 2

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