SMTL ID : 8iej.1

RNF20-RNF40/hRad6A-Ub/nucleosome complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-2-2-1-1-1-1-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain K: C.8, C.11, R.14, C.28, C.31 3 PLIP interactions: 3 interactions with chain K Metal complexes: K:C.8, K:C.28, K:C.31 ZN.2: 5 residues within 4Å: Chain K: C.23, H.25, C.43, K.45, C.46 3 PLIP interactions: 3 interactions with chain K Metal complexes: K:C.23, K:H.25, K:C.43 ZN.3: 6 residues within 4Å: Chain L: C.8, C.10, C.11, R.14, C.28, C.31 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.8, L:C.11, L:C.28, L:C.31 ZN.4: 4 residues within 4Å: Chain L: C.23, H.25, C.43, C.46 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.23, L:H.25, L:C.43, L:C.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Deng, Z. et al., Mechanistic insights into nucleosomal H2B monoubiquitylation mediated by yeast Bre1-Rad6 and its human homolog RNF20/RNF40-hRAD6A. Mol.Cell (2023)

Release Date

2023-09-06

Peptides

Histone H2A type 1-B/E: AE
Histone H2B type 1-K: B
Histone H3.1: CI
Histone H4: DJ
Histone H2B type 1-K: F
E3 ubiquitin-protein ligase BRE1B: K
E3 ubiquitin-protein ligase BRE1A: L
Ubiquitin-conjugating enzyme E2 A: M

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

E
G

B
D

C
E

I
K

D
F

J
L

F
H

K
A

L
M

M
R

Histone H2A type 1-B/E

Histone H2B type 1-K

Histone H3.1

Histone H4

Histone H2B type 1-K

E3 ubiquitin-protein ligase BRE1B

E3 ubiquitin-protein ligase BRE1A

Ubiquitin-conjugating enzyme E2 A

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