SMTL ID : 8iem.1

Cryo-EM structure of ATP13A2 in the E2P state

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x SPM: SPERMINE(Non-covalent)

SPM.1: 14 residues within 4Å: Chain A: W.211, D.214, H.215, Y.216, Y.219, R.420, D.423, V.427, Q.904, N.917, L.918, D.920, F.923, D.927 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.216, A:D.920, A:F.923 Hydrogen bonds: A:Y.216, A:D.920

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: D.473, T.475, G.476, D.838 Ligands: BEF.3 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.475, A:D.838

1 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)

BEF.3: 8 residues within 4Å: Chain A: D.473, K.474, T.475, T.710, G.711, K.819, N.841 Ligands: MG.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mu, J. et al., Conformational cycle of human polyamine transporter ATP13A2. Nat Commun (2023)

Release Date

2023-12-20

Peptides

Polyamine-transporting ATPase 13A2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
P

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Polyamine-transporting ATPase 13A2