SMTL ID : 8ien.1

Cryo-EM structure of ATP13A2 in the E2-Pi state

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: D.513, T.515, D.878 Ligands: ALF.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.513, A:T.515

1 x ALF: TETRAFLUOROALUMINATE ION(Non-covalent)

ALF.2: 12 residues within 4Å: Chain A: T.346, G.347, E.348, D.513, T.515, V.749, T.750, G.751, K.859, N.881, D.882 Ligands: MG.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.513, A:D.513

2 x SPM: SPERMINE(Non-covalent)

SPM.3: 15 residues within 4Å: Chain A: Y.240, H.424, S.425, F.428, V.429, L.432, V.469, L.473, M.477, N.502, L.927, S.930, F.931, F.934, L.996 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.429, A:L.996 Hydrogen bonds: A:S.425 SPM.4: 15 residues within 4Å: Chain A: W.251, D.254, H.255, Y.256, R.460, D.463, T.466, V.467, Q.944, N.957, L.958, D.960, F.963, D.967, P.1039 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.251, A:W.251, A:V.467, A:F.963 Hydrogen bonds: A:D.463, A:D.967

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mu, J. et al., Conformational cycle of human polyamine transporter ATP13A2. Nat Commun (2023)

Release Date

2023-12-20

Peptides

Polyamine-transporting ATPase 13A2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
P

Membrane

We predict this structure to be a membrane protein.
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Polyamine-transporting ATPase 13A2

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