SMTL ID : 8ieo.1

Cryo-EM structure of ATP13A2 in the nominal E1P state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x ALF: TETRAFLUOROALUMINATE ION(Non-covalent)

ALF.1: 11 residues within 4Å: Chain A: G.347, D.513, T.515, G.516, T.750, G.751, K.859, D.878, G.879, N.881 Ligands: MG.2 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 7 residues within 4Å: Chain A: D.513, T.515, G.516, G.877, D.878, G.879 Ligands: ALF.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.513, A:D.878

1 x SPM: SPERMINE(Non-covalent)

SPM.3: 14 residues within 4Å: Chain A: W.251, D.254, H.255, Y.256, R.460, D.463, V.467, Q.944, N.957, G.959, D.960, F.963, D.967, P.1039 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.256, A:Y.256, A:D.960 Hydrogen bonds: A:D.463, A:Q.944, A:N.957

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mu, J. et al., Conformational cycle of human polyamine transporter ATP13A2. Nat Commun (2023)

Release Date

2023-12-20

Peptides

Polyamine-transporting ATPase 13A2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
P

Membrane

We predict this structure to be a membrane protein.
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Polyamine-transporting ATPase 13A2

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