SMTL ID : 8ies.1

Cryo-EM structure of ATP13A2 in the E1P-ADP state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x ALF: TETRAFLUOROALUMINATE ION(Non-covalent)

ALF.1: 9 residues within 4Å: Chain A: D.478, K.479, T.480, T.715, G.716, G.844, N.846 Ligands: MG.2, ADP.3 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.478, A:D.478

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: D.478, T.480, D.843, G.844 Ligands: ALF.1 No protein-ligand interaction detected (PLIP)

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Covalent)

ADP.3: 15 residues within 4Å: Chain A: T.480, M.538, D.539, F.595, Q.600, M.602, K.619, G.620, S.621, R.651, G.716, D.717, R.818, N.846 Ligands: ALF.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.539, A:K.619, A:T.715, A:G.716, A:N.846 Salt bridges: A:R.651

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mu, J. et al., Conformational cycle of human polyamine transporter ATP13A2. Nat Commun (2023)

Release Date

2023-12-20

Peptides

Polyamine-transporting ATPase 13A2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
P

Membrane

We predict this structure to be a membrane protein.
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Polyamine-transporting ATPase 13A2