SMTL ID : 8iey.1

Aquifex aeolicus TsaD-TsaB

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-2-2-mer

Ligands

2 x FE: FE (III) ION(Non-covalent)

FE.1: 4 residues within 4Å: Chain A: H.111, H.115, S.135, D.296 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.111, A:H.115, A:D.296, H2O.1, H2O.1 FE.7: 4 residues within 4Å: Chain C: H.111, H.115, S.135, D.296 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:H.111, C:H.115, C:D.296, H2O.10, H2O.10

10 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 3 residues within 4Å: Chain A: V.313, I.333, W.334 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.335 PEG.3: 5 residues within 4Å: Chain A: D.20, Y.303, M.306, E.307, K.310 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.307, A:E.307, A:K.310 PEG.4: 3 residues within 4Å: Chain A: F.309, K.310, G.312 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.310 PEG.5: 4 residues within 4Å: Chain A: L.63, K.64 Chain B: Y.80, T.81 No protein-ligand interaction detected (PLIP) PEG.6: 6 residues within 4Å: Chain B: K.2, C.47, I.48, R.49, N.52, F.53 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.2, B:R.49, B:R.49, B:N.52 PEG.8: 3 residues within 4Å: Chain C: V.313, I.333, W.334 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:T.335 PEG.9: 5 residues within 4Å: Chain C: D.20, Y.303, M.306, E.307, K.310 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:D.20, C:E.307, C:K.310 PEG.10: 3 residues within 4Å: Chain C: F.309, K.310, G.312 1 PLIP interactions: 1 interactions with chain C Water bridges: C:K.310 PEG.11: 4 residues within 4Å: Chain C: L.63, K.64 Chain D: Y.80, T.81 No protein-ligand interaction detected (PLIP) PEG.12: 6 residues within 4Å: Chain D: K.2, C.47, I.48, R.49, N.52, F.53 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:K.2, D:R.49, D:R.49, D:N.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lu, S.Z. et al., Crystal structure of Aquifex aeolicus TsaD-TsaB complex. To Be Published

Release Date

2024-03-20

Peptides

tRNA N6-adenosine threonylcarbamoyltransferase: AC
Gcp-like domain-containing protein: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

tRNA N6-adenosine threonylcarbamoyltransferase

Gcp-like domain-containing protein

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