SMTL ID : 8if1.1 (2 other biounits)

Complex structure of HLA2402 with recognizing SARS-CoV-2 Y453F epitope NYNYLFRLF

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ASN- TYR- ASN- TYR- LEU- PHE- ARG- LEU- PHE: Spike protein S1(Non-covalent)

ASN-TYR-ASN-TYR-LEU-PHE-ARG-LEU-PHE.1: 29 residues within 4Å: Chain A: Y.12, A.29, M.50, Y.64, E.68, K.71, V.72, H.75, T.78, E.81, N.82, I.85, Y.89, L.100, F.104, Y.121, Y.128, T.148, K.151, W.152, A.155, V.157, Q.160, Q.161, Y.164, T.168, G.172, R.175, Y.176 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:Y.12, A:K.71, A:H.75, A:E.81, A:N.82, A:I.85, A:Y.89, A:L.100, A:F.104, A:Y.128, A:T.148, A:W.152, A:T.168 Hydrogen bonds: A:Y.12, A:E.68, A:E.68, A:K.71, A:N.82, A:N.82, A:Y.89, A:Q.161, A:Q.161, A:R.175, A:R.175, A:Y.176, A:Y.176 pi-Stacking: A:Y.12, A:F.104, A:Y.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Deng, S.S. et al., Complex structure of HLA-A*24:02 and SARS-Cov-2 epitope NYNYLFRLF with Y453F mutation. To Be Published

Release Date

2024-02-21

Peptides

MHC class I antigen: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MHC class I antigen

Beta-2-microglobulin

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