SMTL ID : 8if4.1

Structure of human alpha-2/delta-1 without mirogabalin

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.23 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain A: Q.108, W.113, N.468, K.480, N.481, L.485 No protein-ligand interaction detected (PLIP)

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: Q.112, V.122, N.184 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.122 Hydrogen bonds: A:N.184 NAG.3: 3 residues within 4Å: Chain A: E.548, A.889, N.891 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:E.548 Hydrogen bonds: A:E.548 NAG.4: 3 residues within 4Å: Chain A: K.88, N.92, E.199 No protein-ligand interaction detected (PLIP) NAG.5: 3 residues within 4Å: Chain A: N.663, T.665, E.666 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:T.665 Hydrogen bonds: A:T.665, A:T.665

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kozai, D. et al., Recognition Mechanism of a Novel Gabapentinoid Drug, Mirogabalin, for Recombinant Human alpha 2 delta 1, a Voltage-Gated Calcium Channel Subunit. J.Mol.Biol. (2023)

Release Date

2023-04-05

Peptides

Voltage-dependent calcium channel subunit alpha-2/delta-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Voltage-dependent calcium channel subunit alpha-2/delta-1

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