SMTL ID : 8ifz.1

Cryo-EM structure of SARS-CoV-2 Omicron BA.4/5 spike protein receptor-binding domain in complex with white-tailed deer ACE2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain B: N.35, T.37, R.321 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.35, B:R.321 NAG.2: 1 residues within 4Å: Chain B: N.413 No protein-ligand interaction detected (PLIP) NAG.3: 1 residues within 4Å: Chain B: N.280 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.280 NAG.4: 1 residues within 4Å: Chain B: N.527 No protein-ligand interaction detected (PLIP) NAG.5: 1 residues within 4Å: Chain B: N.72 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.72

1 x ZN: ZINC ION(Non-covalent)

ZN.6: 3 residues within 4Å: Chain B: Y.55, A.81, L.82 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:A.81

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Han, P. et al., Structural basis of SARS-CoV-2 binding to ACE 2 receptor of white-tailed deer, Odocoileus virginianus. To Be Published

Release Date

2023-08-30

Peptides

Spike protein S1: A
Angiotensin-converting enzyme: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Spike protein S1

Angiotensin-converting enzyme

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