SMTL ID : 8igi.1 (1 other biounit)

Crystal structure of HP1526 (XthA)- a base excision DNA repair protein in Helicobacter pylori

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

monomer

Ligands

2 x MN: MANGANESE (II) ION(Non-functional Binders)(Non-covalent)

MN.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MN.2: 2 residues within 4Å: Chain A: N.10, E.36 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.36, H2O.1, H2O.2

1 x BU2: 1,3-BUTANEDIOL(Non-covalent)

BU2.3: 7 residues within 4Å: Chain A: N.109, N.147, A.165, W.200, W.214, I.216, H.243 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.200, A:W.200, A:W.214, A:I.216 Hydrogen bonds: A:N.109, A:N.109 Water bridges: A:N.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dinh, T. et al., Crystal structure of the apurinic/apyrimidinic endonuclease XthA (HP1526 protein) from Helicobacter pylori. Biochem.Biophys.Res.Commun. (2023)

Release Date

2023-12-27

Peptides

Exodeoxyribonuclease (LexA): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Exodeoxyribonuclease (LexA)

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