SMTL ID : 8ihq.1

Cryo-EM structure of ochratoxin A-detoxifying amidohydrolase ADH3

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-octamer

Ligands

16 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.83, H.85, K.210, D.344 Ligands: ZN.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.83, A:H.85 ZN.2: 4 residues within 4Å: Chain A: K.210, H.251, H.271 Ligands: ZN.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.251, A:H.271 ZN.3: 5 residues within 4Å: Chain B: H.83, H.85, K.210, D.344 Ligands: ZN.4 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:H.83, B:H.85 ZN.4: 4 residues within 4Å: Chain B: K.210, H.251, H.271 Ligands: ZN.3 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:H.251, B:H.271 ZN.5: 5 residues within 4Å: Chain C: H.83, H.85, K.210, D.344 Ligands: ZN.6 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:H.83, C:H.85 ZN.6: 4 residues within 4Å: Chain C: K.210, H.251, H.271 Ligands: ZN.5 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:H.251, C:H.271 ZN.7: 5 residues within 4Å: Chain D: H.83, H.85, K.210, D.344 Ligands: ZN.8 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:H.83, D:H.85 ZN.8: 4 residues within 4Å: Chain D: K.210, H.251, H.271 Ligands: ZN.7 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:H.251, D:H.271 ZN.9: 5 residues within 4Å: Chain E: H.83, H.85, K.210, D.344 Ligands: ZN.10 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:H.83, E:H.85, E:D.344 ZN.10: 4 residues within 4Å: Chain E: K.210, H.251, H.271 Ligands: ZN.9 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:H.251, E:H.271 ZN.11: 5 residues within 4Å: Chain F: H.83, H.85, K.210, D.344 Ligands: ZN.12 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:H.83, F:H.85, F:D.344 ZN.12: 4 residues within 4Å: Chain F: K.210, H.251, H.271 Ligands: ZN.11 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:H.251, F:H.271 ZN.13: 5 residues within 4Å: Chain G: H.83, H.85, K.210, D.344 Ligands: ZN.14 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:H.83, G:H.85, G:D.344 ZN.14: 4 residues within 4Å: Chain G: K.210, H.251, H.271 Ligands: ZN.13 2 PLIP interactions: 2 interactions with chain G Metal complexes: G:H.251, G:H.271 ZN.15: 5 residues within 4Å: Chain H: H.83, H.85, K.210, D.344 Ligands: ZN.16 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:H.83, H:H.85, H:D.344 ZN.16: 4 residues within 4Å: Chain H: K.210, H.251, H.271 Ligands: ZN.15 2 PLIP interactions: 2 interactions with chain H Metal complexes: H:H.251, H:H.271

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dai, L. et al., Cryo-EM structure and rational engineering of a superefficient ochratoxin A-detoxifying amidohydrolase. J Hazard Mater (2023)

Release Date

2023-08-30

Peptides

Amidohydrolase family protein: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

Amidohydrolase family protein

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