SMTL ID : 8iiz.1

Crystal structure of MBP fused GAS41 YEATS domain in complex with H3K27ac peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-2-mer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 16 residues within 4Å: Chain A: N.15, D.17, K.18, W.65, A.66, D.68, R.69, E.114, E.156, P.157, Y.158, F.159, W.233, M.333, W.343, R.347 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:W.65, A:R.69, A:R.69, A:E.156, A:Y.158, A:R.347

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.478 GOL.3: 4 residues within 4Å: Chain A: V.385, Y.405, K.407, E.442 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.407, A:K.407, A:E.442 GOL.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kikuchi, M. et al., GAS41 promotes H2A.Z deposition through recognition of the N terminus of histone H3 by the YEATS domain. Proc.Natl.Acad.Sci.USA (2023)

Release Date

2023-11-01

Peptides

Maltodextrin-binding protein,YEATS domain-containing protein 4: A
Histone H3.1: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Maltodextrin-binding protein,YEATS domain-containing protein 4

Histone H3.1

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