SMTL ID : 8ijp.1

Structure of DNA binding domain of McrBC endonuclease bound to DNA: L68Y mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-dimer

Ligands

2 x BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

BTB.1: 13 residues within 4Å: Chain B: Q.21, T.23, K.36, L.37, S.38, Y.41, W.49 Chain C: G.4, A.5, C.6, C.7 Chain D: C.11, T.12 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.38 Water bridges: B:T.23, B:L.37 BTB.2: 12 residues within 4Å: Chain A: Q.21, T.23, K.36, L.37, S.38, Y.41, W.49 Chain C: A.11, G.12 Chain D: A.5, C.6, C.7 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.21, A:S.38 Water bridges: A:T.23, A:L.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Adhav, V.A. et al., Structural basis of target recognition by the DNA binding domain of McrBC. To Be Published

Release Date

2024-02-28

Peptides

Type IV methyl-directed restriction enzyme EcoKMcrB subunit: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Type IV methyl-directed restriction enzyme EcoKMcrB subunit