SMTL ID : 8ijw.1

Cryo-EM structure of the gastric proton pump with bound DQ-06

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-mer
Ligands
5 x PCW: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
1 x MG: MAGNESIUM ION(Non-covalent)
1 x PXR: N-methyl-1-[4-[(2-phenylmethoxycyclohexa-1,3-dien-1-yl)methoxy]cyclohexa-1,3-dien-1-yl]methanamine(Non-covalent)
3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
2 x CLR: CHOLESTEROL(Non-covalent)(Covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Abe, K. et al., Deep learning driven de novo drug design based on gastric proton pump structures. Commun Biol (2023)
Release Date
2023-08-30
Peptides
Sodium/potassium-transporting ATPase subunit alpha: A
Potassium-transporting ATPase subunit beta: B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
Membrane
We predict this structure to be a membrane protein.

Sodium/potassium-transporting ATPase subunit alpha

Potassium-transporting ATPase subunit beta

Related Entries With Identical Sequence

2xzb.1 | 2yn9.1 | 4ux1.1 | 4ux2.1 | 5y0b.1 | 7w47.1 | 7w48.1 | 7w49.1 | 7w4a.1 | 8ijv.1 | 8ijx.1 | 8jmn.1 | 8wa5.1