SMTL ID : 8im1.1

mCherry-LaM1 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

hetero-4-4-mer

Ligands

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.19, E.40 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.40 Salt bridges: A:R.19 SO4.2: 1 residues within 4Å: Chain A: R.19 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.19 SO4.3: 3 residues within 4Å: Chain A: K.51, K.53, I.214 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.51, A:K.53 SO4.4: 5 residues within 4Å: Chain A: R.168, H.176, D.178 Chain C: R.168, D.178 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:D.178 Salt bridges: A:R.168, A:H.176, C:R.168 Water bridges: C:D.178 SO4.5: 4 residues within 4Å: Chain C: F.17, R.19 Chain E: N.209, I.214 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain C Hydrogen bonds: E:N.209 Salt bridges: C:R.19 SO4.6: 5 residues within 4Å: Chain C: R.19, E.40 Chain E: K.51, K.53, I.214 3 PLIP interactions: 2 interactions with chain E, 1 interactions with chain C Salt bridges: E:K.51, E:K.53, C:R.19 SO4.7: 3 residues within 4Å: Chain C: N.209, I.214 Chain E: R.19 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain E Hydrogen bonds: C:N.209 Water bridges: C:E.210 Salt bridges: E:R.19 SO4.8: 5 residues within 4Å: Chain C: K.51, K.53, I.214 Chain E: R.19, E.40 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain E Salt bridges: C:K.51, C:K.53, E:R.19 Hydrogen bonds: E:E.40 SO4.9: 5 residues within 4Å: Chain C: K.202, D.204 Chain E: K.202, D.204, R.220 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain E Hydrogen bonds: C:D.204 Water bridges: C:R.220 Salt bridges: C:K.202, E:R.220 SO4.10: 2 residues within 4Å: Chain G: F.17, R.19 3 PLIP interactions: 3 interactions with chain G Water bridges: G:R.19, G:R.19 Salt bridges: G:R.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liang, H. et al., Structural Insights into the Binding of Red Fluorescent Protein mCherry-Specific Nanobodies. Int J Mol Sci (2023)

Release Date

2023-06-21

Peptides

MCherry fluorescent protein: ACEG
LaM1: BDFH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

G
G

B
B

D
D

F
F

H
H

MCherry fluorescent protein

LaM1

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