SMTL ID : 8ind.1

Crystal structure of UGT74AN3-UDP-RES

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x 6JI: 5-[(1R,2S,4R,6R,7R,10S,11S,14S,16R)-14-hydroxy-7,11-dimethyl-3-oxapentacyclo[8.8.0.02,4.02,7.011,16]octadecan-6-yl]pyran-2-one(Non-covalent)

6JI.1: 14 residues within 4Å: Chain A: F.11, H.16, I.72, E.76, M.79, S.116, Q.137, F.184, L.194, L.195, Q.198, L.288, W.380 Ligands: TRS.3 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.11, A:E.76, A:F.184, A:F.184, A:F.184, A:L.194, A:L.288, A:W.380, A:W.380 Water bridges: A:E.76, A:Q.137, A:L.288 Salt bridges: A:H.16 pi-Stacking: A:F.11 pi-Cation interactions: A:H.16

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.2: 17 residues within 4Å: Chain A: G.15, N.18, Y.282, S.284, G.286, S.287, V.313, W.340, C.341, Q.343, H.358, G.360, W.361, N.362, S.363, E.366 Ligands: TRS.3 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:G.15, A:N.18, A:S.287, A:L.288, A:C.341, A:C.341, A:Q.343, A:N.362, A:N.362, A:S.363, A:E.366 Water bridges: A:S.287, A:S.287, A:Q.383 Salt bridges: A:H.358, A:H.358 pi-Stacking: A:W.340

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.3: 10 residues within 4Å: Chain A: G.15, H.16, T.136, Q.137, G.360, W.361, N.362, D.382 Ligands: 6JI.1, UDP.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.15, A:T.136, A:W.361, A:D.382 Water bridges: A:Q.383

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, W. et al., Substrate Promiscuity, Crystal Structure, and Application of a Plant UDP-Glycosyltransferase UGT74AN3. Acs Catalysis (2024)

Release Date

2024-01-24

Peptides

Glycosyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycosyltransferase

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