- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-trimer
- Ligands
- 9 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 36 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.10: 4 residues within 4Å:- Chain A: Y.24, T.25, N.26, N.57
Ligand excluded by PLIPNAG.11: 4 residues within 4Å:- Chain A: N.118, T.120, N.121, V.123
Ligand excluded by PLIPNAG.12: 2 residues within 4Å:- Chain A: N.159, N.160
Ligand excluded by PLIPNAG.13: 7 residues within 4Å:- Chain A: T.104, N.229, T.231
- Chain C: R.452, S.454, K.455, K.457
Ligand excluded by PLIPNAG.14: 4 residues within 4Å:- Chain A: N.275, E.276, N.277
- Chain C: K.553
Ligand excluded by PLIPNAG.15: 2 residues within 4Å:- Chain A: N.326, Q.575
Ligand excluded by PLIPNAG.16: 3 residues within 4Å:- Chain A: H.334, N.338, F.366
Ligand excluded by PLIPNAG.17: 2 residues within 4Å:- Chain A: N.611, T.613
Ligand excluded by PLIPNAG.18: 1 residues within 4Å:- Chain A: N.652
Ligand excluded by PLIPNAG.19: 4 residues within 4Å:- Chain A: Y.702, S.703, N.704
- Chain B: Y.791
Ligand excluded by PLIPNAG.20: 3 residues within 4Å:- Chain A: E.1067, N.1069
- Chain B: Q.890
Ligand excluded by PLIPNAG.21: 1 residues within 4Å:- Chain A: N.1129
Ligand excluded by PLIPNAG.22: 4 residues within 4Å:- Chain B: Y.24, T.25, N.26, N.57
Ligand excluded by PLIPNAG.23: 4 residues within 4Å:- Chain B: N.118, T.120, N.121, V.123
Ligand excluded by PLIPNAG.24: 2 residues within 4Å:- Chain B: N.159, N.160
Ligand excluded by PLIPNAG.25: 7 residues within 4Å:- Chain A: R.452, S.454, K.455, K.457
- Chain B: T.104, N.229, T.231
Ligand excluded by PLIPNAG.26: 4 residues within 4Å:- Chain A: K.553
- Chain B: N.275, E.276, N.277
Ligand excluded by PLIPNAG.27: 2 residues within 4Å:- Chain B: N.326, Q.575
Ligand excluded by PLIPNAG.28: 3 residues within 4Å:- Chain B: H.334, N.338, F.366
Ligand excluded by PLIPNAG.29: 2 residues within 4Å:- Chain B: N.611, T.613
Ligand excluded by PLIPNAG.30: 1 residues within 4Å:- Chain B: N.652
Ligand excluded by PLIPNAG.31: 4 residues within 4Å:- Chain B: Y.702, S.703, N.704
- Chain C: Y.791
Ligand excluded by PLIPNAG.32: 3 residues within 4Å:- Chain B: E.1067, N.1069
- Chain C: Q.890
Ligand excluded by PLIPNAG.33: 1 residues within 4Å:- Chain B: N.1129
Ligand excluded by PLIPNAG.34: 4 residues within 4Å:- Chain C: Y.24, T.25, N.26, N.57
Ligand excluded by PLIPNAG.35: 4 residues within 4Å:- Chain C: N.118, T.120, N.121, V.123
Ligand excluded by PLIPNAG.36: 2 residues within 4Å:- Chain C: N.159, N.160
Ligand excluded by PLIPNAG.37: 7 residues within 4Å:- Chain B: R.452, S.454, K.455, K.457
- Chain C: T.104, N.229, T.231
Ligand excluded by PLIPNAG.38: 4 residues within 4Å:- Chain B: K.553
- Chain C: N.275, E.276, N.277
Ligand excluded by PLIPNAG.39: 2 residues within 4Å:- Chain C: N.326, Q.575
Ligand excluded by PLIPNAG.40: 3 residues within 4Å:- Chain C: H.334, N.338, F.366
Ligand excluded by PLIPNAG.41: 2 residues within 4Å:- Chain C: N.611, T.613
Ligand excluded by PLIPNAG.42: 1 residues within 4Å:- Chain C: N.652
Ligand excluded by PLIPNAG.43: 4 residues within 4Å:- Chain A: Y.791
- Chain C: Y.702, S.703, N.704
Ligand excluded by PLIPNAG.44: 3 residues within 4Å:- Chain A: Q.890
- Chain C: E.1067, N.1069
Ligand excluded by PLIPNAG.45: 1 residues within 4Å:- Chain C: N.1129
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tamura, T. et al., Virological characteristics of the SARS-CoV-2 XBB variant derived from recombination of two Omicron subvariants. Nat Commun (2023)
- Release Date
- 2023-05-24
- Peptides
- Spike glycoprotein: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-trimer
- Ligands
- 9 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 36 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tamura, T. et al., Virological characteristics of the SARS-CoV-2 XBB variant derived from recombination of two Omicron subvariants. Nat Commun (2023)
- Release Date
- 2023-05-24
- Peptides
- Spike glycoprotein: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C