SMTL ID : 8ipj.1

Crystal structure of the Legionella effector protein MavL with ADPR-Ub

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x AR6: [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL[HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE(Non-covalent)

AR6.1: 20 residues within 4Å: Chain A: H.102, G.181, G.183, T.184, G.185, C.186, F.187, K.196, P.224, Y.225, A.273, W.274, A.275, N.282, D.283, T.291, D.292, D.293 Chain B: D.41, R.44 31 PLIP interactions: 26 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:G.181, A:G.183, A:G.183, A:G.185, A:C.186, A:F.187, A:K.196, A:K.196, A:N.282, A:D.283, A:D.292, A:D.293, A:D.293, B:R.44 Water bridges: A:V.64, A:H.102, A:H.102, A:H.102, A:H.102, A:S.105, A:Y.225, A:S.278, A:T.291, A:T.291, B:D.41, B:D.41, B:D.54 pi-Stacking: A:H.102, A:Y.225, A:Y.225 Salt bridges: B:R.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fu, J. et al., Legionella maintains host cell ubiquitin homeostasis by effectors with unique catalytic mechanisms. Nat Commun (2024)

Release Date

2024-03-20

Peptides

MavL: A
Ubiquitin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MavL

Ubiquitin