SMTL ID : 8iqn.1

Crystal structure of the human vitamin D receptor ligand binding domain complexed with 24,24-F2-25(OH)D3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

monomer

Ligands

1 x SRF: (1~{S},3~{Z})-3-[(2~{E})-2-[(1~{R},3~{a}~{S},7~{a}~{R})-1-[(2~{R})-5,5-bis(fluoranyl)-6-methyl-6-oxidanyl-heptan-2-yl]-7~{a}-methyl-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexan-1-ol(Non-covalent)

SRF.1: 19 residues within 4Å: Chain A: Y.26, Y.30, L.110, L.113, L.116, V.117, S.120, I.154, R.157, S.158, S.161, W.169, C.171, V.183, H.188, L.192, H.280, Y.284, F.305 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.26, A:L.110, A:L.116, A:V.117, A:R.157, A:W.169, A:V.183, A:V.183, A:L.192 Hydrogen bonds: A:Y.26, A:S.161, A:H.280 Halogen bonds: A:L.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kakuda, S., Crystal structure of the human vitamin D receptor ligand binding domain complexed with 24,24-F2-25(OH)D3. To Be Published

Release Date

2024-03-27

Peptides

Vitamin D3 receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vitamin D3 receptor

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