SMTL ID : 8iqs.1 (1 other biounit)

Crystal structure of Anti-PEG antibody M11 Fv-clasp fragment with PEG (co-crystallization with PEG3350)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.16 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain B: R.104, A.105, S.137 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.105 Salt bridges: B:R.104

1 x PE8: 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL(Non-covalent)

PE8.2: 14 residues within 4Å: Chain A: H.46, Y.52 Chain B: N.46, Y.47, W.48, R.67, N.71, Y.117, G.118, N.119, Y.120, V.121, A.122, Y.123 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:N.71, B:N.119, B:N.119 Water bridges: B:W.48, B:W.48, B:R.67, B:N.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y. et al., Comparation of structures and binding properties between two anti-polyethylene glycol antibodies induced via T cell-independent and T cell-dependent pathway. To Be Published

Release Date

2024-03-20

Peptides

M11 VL-SARAH: A
M11 VH-SARAH: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

M11 VL-SARAH

M11 VH-SARAH

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