SMTL ID : 8iry.1 (1 other biounit)

Carbon Sulfoxide lyase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)

PLP.1: 15 residues within 4Å: Chain A: G.102, S.103, N.104, Y.127, T.172, L.174, S.176, D.201, A.203, Q.204, S.221, R.223, K.224 Chain B: E.268 Ligands: PYR.2 16 PLIP interactions: 15 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:T.172, A:A.203, A:Q.204, A:K.224 Hydrogen bonds: A:S.103, A:N.104, A:Q.204, A:S.221, A:S.221, A:K.224 Water bridges: A:N.104, A:H.105, B:E.268 Salt bridges: A:R.223, A:K.224 pi-Stacking: A:Y.127 PLP.3: 14 residues within 4Å: Chain A: E.268 Chain B: G.102, S.103, N.104, Y.127, T.172, L.174, S.176, D.201, A.203, Q.204, S.221, R.223, K.224 14 PLIP interactions: 13 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:T.172, B:A.203, B:K.224 Hydrogen bonds: B:S.103, B:N.104, B:Q.204, B:S.221, B:S.221 Water bridges: B:H.105, B:R.358, A:Y.69 Salt bridges: B:R.223, B:K.224 pi-Stacking: B:Y.127

1 x PYR: PYRUVIC ACID(Non-covalent)

PYR.2: 11 residues within 4Å: Chain A: G.43, A.44, Y.127, S.176, Q.204, R.223, K.224, R.358, R.369 Chain B: Y.69 Ligands: PLP.1 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:Q.204, A:T.352, A:T.352, A:R.358, A:R.369, A:R.369 Salt bridges: A:R.223, A:K.224, A:R.358, A:R.369

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wei, L. et al., Structure of mycobacterial ergothioneine-biosynthesis C-S lyase EgtE. J.Biol.Chem. (2024)

Release Date

2024-03-06

Peptides

Probable hercynylcysteine sulfoxide lyase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Probable hercynylcysteine sulfoxide lyase

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