SMTL ID : 8is0.2 (1 other biounit)

Carbon Sulfoxide lyase - Y106F

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.02 Å

Oligo State

homo-dimer

Ligands

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)

PLP.1: 15 residues within 4Å: Chain A: G.102, S.103, N.104, F.127, T.172, L.174, S.176, D.201, A.203, Q.204, S.221, R.223, K.224 Chain B: E.268 Ligands: DHA.2 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:T.172, A:A.203, A:K.224 Hydrogen bonds: A:S.103, A:N.104, A:Q.204, A:S.221, A:S.221, A:K.224 Salt bridges: A:R.223 pi-Stacking: A:F.127 PLP.3: 15 residues within 4Å: Chain A: E.268 Chain B: G.102, S.103, N.104, F.127, T.172, L.174, S.176, D.201, A.203, Q.204, S.221, R.223, K.224 Ligands: DHA.4 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:T.172, B:A.203, B:K.224 Hydrogen bonds: B:S.103, B:N.104, B:Q.204, B:S.221, B:S.221 Salt bridges: B:R.223 pi-Stacking: B:F.127

2 x DHA: 2-AMINO-ACRYLIC ACID(Covalent)

DHA.2: 10 residues within 4Å: Chain A: G.43, A.44, S.176, Q.204, R.223, K.224, R.358, R.369 Chain B: Y.69 Ligands: PLP.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.204, A:R.223 Salt bridges: A:K.224, A:R.358, A:R.369 DHA.4: 10 residues within 4Å: Chain A: Y.69 Chain B: G.43, A.44, S.176, Q.204, R.223, K.224, R.358, R.369 Ligands: PLP.3 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Q.204, B:R.223 Salt bridges: B:K.224, B:R.358, B:R.369

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wei, L. et al., Structure of mycobacterial ergothioneine-biosynthesis C-S lyase EgtE. J.Biol.Chem. (2024)

Release Date

2024-03-06

Peptides

Probable hercynylcysteine sulfoxide lyase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

Probable hercynylcysteine sulfoxide lyase

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