SMTL ID : 8isk.1

Pr conformer of Zea mays phytochrome A1 - ZmphyA1-Pr

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x O6E: 3-[5-[[(3~{R},4~{R})-3-ethyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-2-[[5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid(Covalent)

O6E.1: 14 residues within 4Å: Chain A: M.241, Y.243, D.274, I.275, P.276, F.283, R.319, H.322, C.324, H.325, Y.328, M.332, V.339, H.374 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.243, A:D.274, A:I.275, A:P.276, A:F.283, A:H.322, A:H.325, A:Y.328 Hydrogen bonds: A:D.274, A:D.274, A:H.322 Salt bridges: A:R.289, A:R.319, A:H.325 O6E.2: 19 residues within 4Å: Chain B: I.75, M.241, Y.243, Y.270, D.274, P.276, A.279, L.282, F.283, R.289, H.322, C.324, H.325, Y.328, M.332, V.339, L.370, V.372, H.374 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:Y.243, B:P.276, B:A.279, B:F.283, B:Y.328, B:Y.328, B:V.339, B:L.370 Hydrogen bonds: B:D.274, B:D.274, B:D.274, B:S.337 Salt bridges: B:R.289, B:R.289, B:H.325

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Y. et al., Structural insights into plant phytochrome A as a highly sensitized photoreceptor. Cell Res. (2023)

Release Date

2023-08-09

Peptides

Phytochrome: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Phytochrome