SMTL ID : 8it9.1

Co-crystal structure of FTO bound to 22

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.14 Å

Oligo State

monomer

Ligands

1 x ZL6: 2-[(2,6-diethyl-4-pyridin-4-yl-phenyl)amino]-6-(1,4-oxazepan-4-ylmethyl)benzoic acid(Non-covalent)

ZL6.1: 18 residues within 4Å: Chain A: V.69, I.71, L.77, T.78, P.79, R.82, Y.92, Y.94, L.95, K.202, A.213, V.214, S.215, H.217, H.218, D.219, E.220 Ligands: AKG.2 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.69, A:I.71, A:T.78, A:Y.94, A:Y.94, A:L.95, A:L.95 Hydrogen bonds: A:Y.92, A:S.215, A:E.220 Water bridges: A:K.202 pi-Cation interactions: A:H.217

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.2: 11 residues within 4Å: Chain A: R.82, N.191, H.217, D.219, H.293, V.295, R.302, S.304, T.306, R.308 Ligands: ZL6.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:T.306 Hydrogen bonds: A:R.82, A:S.304 Water bridges: A:R.82, A:R.302 Salt bridges: A:H.217, A:H.293, A:R.302, A:R.308

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiao, P. et al., Rational Design of RNA Demethylase FTO Inhibitors with Enhanced Antileukemia Drug-Like Properties. J.Med.Chem. (2023)

Release Date

2024-02-14

Peptides

Alpha-ketoglutarate-dependent dioxygenase FTO: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-ketoglutarate-dependent dioxygenase FTO

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