SMTL ID : 8ito.1

Crystal structure of FeRlp from Desulfovibrio vulgaris (Hildenborough)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 7 residues within 4Å: Chain A: Y.17, R.23, D.25, K.26, R.27, P.46 Chain B: R.9 7 PLIP interactions: 1 interactions with chain B, 6 interactions with chain A Salt bridges: B:R.9, A:R.23, A:K.26, A:R.27 Hydrogen bonds: A:Y.17, A:K.26, A:R.27 PO4.3: 7 residues within 4Å: Chain A: C.15 Chain B: Y.17, R.23, D.25, K.26, R.27, P.46 8 PLIP interactions: 7 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Y.17, B:D.25, B:K.26, B:R.27, A:C.15 Water bridges: B:R.27 Salt bridges: B:R.23, B:R.27

2 x FE: FE (III) ION(Non-covalent)

FE.2: 4 residues within 4Å: Chain A: C.10, C.15, C.45, C.48 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.10, A:C.15, A:C.45, A:C.48 FE.4: 4 residues within 4Å: Chain B: C.10, C.15, C.45, C.48 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.10, B:C.15, B:C.45, B:C.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakatsuji, T. et al., Crystal structure of FeRlp from Desulfovibrio vulgaris (Hildenborough). To Be Published

Release Date

2024-03-27

Peptides

Rubredoxin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Rubredoxin