SMTL ID : 8iv3.1

Crystal structure of SARS-CoV2 N-NTD complexed with 5-Benzyloxygramine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

1 x DJU: N,N-dimethyl-1-(5-phenylmethoxy-1H-indol-3-yl)methanamine(Non-covalent)

DJU.1: 8 residues within 4Å: Chain A: N.29, N.131, A.133 Chain B: G.105 Chain D: W.33, N.56, N.58, I.127 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:N.58, D:I.127 pi-Stacking: D:W.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hong, J.Y. et al., Targeting protein-protein interaction interfaces with antiviral N protein inhibitor in SARS-CoV-2. Biophys.J. (2024)

Release Date

2024-02-07

Peptides

Nucleoprotein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Nucleoprotein

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