SMTL ID : 8ive.1

crystal structure of SulE mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.44 Å

Oligo State

homo-dimer

Ligands

2 x CIE: 2-[[[[(4-CHLORO-6-METHOXY-2-PYRIMIDINYL)AMINO]CARBONYL]AMINO]SULFONYL]BENZOIC ACID ETHYL ESTER(Non-covalent)

CIE.1: 21 residues within 4Å: Chain A: G.77, G.78, L.80, N.141, S.142, G.146, A.147, R.150, D.151, H.208, A.209, A.210, A.234, F.257, F.293, W.296, F.334 Chain B: V.42, I.43, R.44, N.123 12 PLIP interactions: 11 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:A.234, A:F.257, A:F.257, A:F.293, A:W.296, A:F.334 Hydrogen bonds: A:G.78, A:R.150, A:A.210, B:R.44 Water bridges: A:S.142 Salt bridges: A:R.150 CIE.3: 22 residues within 4Å: Chain A: V.42, I.43, R.44, N.123 Chain B: G.77, G.78, L.80, N.141, S.142, G.146, A.147, R.150, D.151, H.208, A.209, A.210, A.234, F.257, F.293, W.296, W.297, F.334 16 PLIP interactions: 14 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:L.80, B:A.234, B:F.257, B:F.257, B:F.293, B:W.296, B:W.297, B:F.334, A:I.43 Hydrogen bonds: B:G.78, B:R.150, B:A.210, A:R.44 Water bridges: B:S.142, B:S.142 Salt bridges: B:R.150

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain A: N.141, S.142, S.143, K.144, F.175, M.178 Chain B: T.51, F.52, Y.53 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:N.141, B:Y.53 Water bridges: A:M.178, A:M.178, B:Y.53 GOL.4: 8 residues within 4Å: Chain A: F.52, Y.53 Chain B: N.141, S.142, S.143, K.144, F.175, M.178 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:Y.53, B:N.141 Water bridges: B:M.178, B:M.178

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, B. et al., Crystal structures of herbicide-detoxifying esterase reveal a lid loop affecting substrate binding and activity. Nat Commun (2023)

Release Date

2023-08-02

Peptides

Alpha/beta fold hydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Alpha/beta fold hydrolase

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