SMTL ID : 8ix9.1 (1 other biounit)

Pseudomoans Aerugiona Wildtype Ketopantoate Reductase with NADPH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 26 residues within 4Å: Chain A: G.12, T.13, G.14, A.15, I.16, R.36, S.37, E.38, G.80, A.81, K.82, L.89, L.92, L.106, Q.107, N.108, C.131, I.133, R.137, K.196, N.200, Y.263, S.266, E.278 Ligands: FMT.2, FMT.3 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:I.16 Hydrogen bonds: A:T.13, A:A.15, A:I.16, A:R.36, A:S.37, A:N.108, A:N.108, A:I.133, A:I.133, A:K.196, A:N.200, A:S.266, A:E.278 Water bridges: A:G.14, A:G.17, A:R.36, A:R.36, A:R.36, A:K.82, A:V.135, A:R.137, A:E.278 Salt bridges: A:R.36, A:K.82, A:K.82, A:R.137, A:R.137, A:R.275 pi-Cation interactions: A:R.36 NDP.6: 26 residues within 4Å: Chain B: G.12, T.13, G.14, A.15, I.16, R.36, S.37, E.38, G.80, A.81, K.82, L.89, L.92, L.106, Q.107, N.108, C.131, I.133, R.137, K.196, N.200, Y.263, S.266, E.278 Ligands: FMT.7, FMT.8 30 PLIP interactions: 30 interactions with chain B Hydrophobic interactions: B:I.16 Hydrogen bonds: B:T.13, B:A.15, B:I.16, B:R.36, B:S.37, B:E.38, B:N.108, B:N.108, B:I.133, B:I.133, B:K.196, B:N.200, B:S.266, B:E.278 Water bridges: B:G.14, B:G.17, B:R.36, B:R.36, B:R.36, B:K.82, B:V.135, B:R.137 Salt bridges: B:R.36, B:K.82, B:K.82, B:R.137, B:R.137, B:R.275 pi-Cation interactions: B:R.36

4 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 7 residues within 4Å: Chain A: N.108, N.200, N.204, Y.263, P.265, S.266 Ligands: NDP.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.108, A:N.200, A:N.204, A:N.204, A:Y.263, A:S.266 FMT.3: 4 residues within 4Å: Chain A: F.132, I.133, W.199 Ligands: NDP.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.133 FMT.7: 7 residues within 4Å: Chain B: N.108, N.200, N.204, Y.263, P.265, S.266 Ligands: NDP.6 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.108, B:N.200, B:N.204, B:N.204, B:S.266 FMT.8: 4 residues within 4Å: Chain B: F.132, I.133, W.199 Ligands: NDP.6 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:I.133

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 9 residues within 4Å: Chain A: L.206, L.209, L.226, I.230, R.299, A.302, L.303 Chain B: A.302 Ligands: GOL.9 No protein-ligand interaction detected (PLIP) GOL.5: 6 residues within 4Å: Chain A: N.50, S.51, A.52, E.144, H.145, Q.146 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.52, A:E.144, A:H.145 GOL.9: 9 residues within 4Å: Chain A: A.302 Chain B: L.206, L.209, L.226, I.230, R.299, A.302, L.303 Ligands: GOL.4 No protein-ligand interaction detected (PLIP) GOL.10: 6 residues within 4Å: Chain B: N.50, S.51, A.52, E.144, H.145, Q.146 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.52, B:H.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Choudhury, G.B. et al., KEtopantoate reductase of Pseudomonas. To Be Published

Release Date

2024-04-03

Peptides

2-dehydropantoate 2-reductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

2-dehydropantoate 2-reductase

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