- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-9-9-9-mer
- Ligands
- 9 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Covalent)
- 9 x G2P: PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER(Non-covalent)
G2P.2: 19 residues within 4Å:- Chain B: G.10, Q.11, C.12, Q.15, A.97, G.98, N.99, S.138, G.140, G.141, G.142, T.143, G.144, D.177, N.204, Y.222, L.225, N.226
- Chain G: E.260
16 PLIP interactions:15 interactions with chain B, 1 interactions with chain G- Hydrogen bonds: B:Q.11, B:C.12, B:A.97, B:G.98, B:N.99, B:S.138, B:G.142, B:T.143, B:T.143, B:G.144, B:D.177, B:D.177, B:N.204, B:N.226, B:N.226, G:E.260
G2P.5: 19 residues within 4Å:- Chain A: E.260
- Chain E: G.10, Q.11, C.12, Q.15, A.97, G.98, N.99, S.138, G.140, G.141, G.142, T.143, G.144, D.177, N.204, Y.222, L.225, N.226
16 PLIP interactions:15 interactions with chain E, 1 interactions with chain A- Hydrogen bonds: E:Q.11, E:C.12, E:A.97, E:G.98, E:N.99, E:S.138, E:G.142, E:T.143, E:T.143, E:G.144, E:D.177, E:D.177, E:N.204, E:N.226, E:N.226, A:E.260
G2P.8: 18 residues within 4Å:- Chain H: G.10, Q.11, C.12, Q.15, A.97, G.98, N.99, S.138, G.140, G.141, G.142, T.143, G.144, D.177, N.204, Y.222, L.225, N.226
15 PLIP interactions:15 interactions with chain H- Hydrogen bonds: H:Q.11, H:C.12, H:A.97, H:G.98, H:N.99, H:S.138, H:G.142, H:T.143, H:T.143, H:G.144, H:D.177, H:D.177, H:N.204, H:N.226, H:N.226
G2P.11: 18 residues within 4Å:- Chain K: G.10, Q.11, C.12, Q.15, A.97, G.98, N.99, S.138, G.140, G.141, G.142, T.143, G.144, D.177, N.204, Y.222, L.225, N.226
15 PLIP interactions:15 interactions with chain K- Hydrogen bonds: K:Q.11, K:C.12, K:A.97, K:G.98, K:N.99, K:S.138, K:G.142, K:T.143, K:T.143, K:G.144, K:D.177, K:D.177, K:N.204, K:N.226, K:N.226
G2P.14: 19 residues within 4Å:- Chain J: E.260
- Chain N: G.10, Q.11, C.12, Q.15, A.97, G.98, N.99, S.138, G.140, G.141, G.142, T.143, G.144, D.177, N.204, Y.222, L.225, N.226
16 PLIP interactions:15 interactions with chain N, 1 interactions with chain J- Hydrogen bonds: N:Q.11, N:C.12, N:A.97, N:G.98, N:N.99, N:S.138, N:G.142, N:T.143, N:T.143, N:G.144, N:D.177, N:D.177, N:N.204, N:N.226, N:N.226, J:E.260
G2P.17: 19 residues within 4Å:- Chain M: E.260
- Chain Q: G.10, Q.11, C.12, Q.15, A.97, G.98, N.99, S.138, G.140, G.141, G.142, T.143, G.144, D.177, N.204, Y.222, L.225, N.226
16 PLIP interactions:15 interactions with chain Q, 1 interactions with chain M- Hydrogen bonds: Q:Q.11, Q:C.12, Q:A.97, Q:G.98, Q:N.99, Q:S.138, Q:G.142, Q:T.143, Q:T.143, Q:G.144, Q:D.177, Q:D.177, Q:N.204, Q:N.226, Q:N.226, M:E.260
G2P.20: 18 residues within 4Å:- Chain T: G.10, Q.11, C.12, Q.15, A.97, G.98, N.99, S.138, G.140, G.141, G.142, T.143, G.144, D.177, N.204, Y.222, L.225, N.226
15 PLIP interactions:15 interactions with chain T- Hydrogen bonds: T:Q.11, T:C.12, T:A.97, T:G.98, T:N.99, T:S.138, T:G.142, T:T.143, T:T.143, T:G.144, T:D.177, T:D.177, T:N.204, T:N.226, T:N.226
G2P.23: 19 residues within 4Å:- Chain S: E.260
- Chain W: G.10, Q.11, C.12, Q.15, A.97, G.98, N.99, S.138, G.140, G.141, G.142, T.143, G.144, D.177, N.204, Y.222, L.225, N.226
16 PLIP interactions:15 interactions with chain W, 1 interactions with chain S- Hydrogen bonds: W:Q.11, W:C.12, W:A.97, W:G.98, W:N.99, W:S.138, W:G.142, W:T.143, W:T.143, W:G.144, W:D.177, W:D.177, W:N.204, W:N.226, W:N.226, S:E.260
G2P.26: 19 residues within 4Å:- Chain V: E.260
- Chain Z: G.10, Q.11, C.12, Q.15, A.97, G.98, N.99, S.138, G.140, G.141, G.142, T.143, G.144, D.177, N.204, Y.222, L.225, N.226
16 PLIP interactions:15 interactions with chain Z, 1 interactions with chain V- Hydrogen bonds: Z:Q.11, Z:C.12, Z:A.97, Z:G.98, Z:N.99, Z:S.138, Z:G.142, Z:T.143, Z:T.143, Z:G.144, Z:D.177, Z:D.177, Z:N.204, Z:N.226, Z:N.226, V:E.260
- 9 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
ATP.3: 19 residues within 4Å:- Chain C: R.37, R.39, P.40, Q.109, T.110, S.111, S.112, G.113, K.114, T.115, H.116, N.221, E.222, H.223, S.224, S.225, L.255, A.256, G.257
20 PLIP interactions:20 interactions with chain C- Hydrogen bonds: C:T.110, C:S.111, C:S.112, C:G.113, C:K.114, C:T.115, C:T.115, C:T.115, C:H.116, C:H.116, C:N.221, C:H.223, C:S.225, C:S.225, C:L.255, C:G.257
- Salt bridges: C:K.114, C:K.114
- pi-Stacking: C:H.116, C:H.116
ATP.6: 19 residues within 4Å:- Chain F: R.37, R.39, P.40, Q.109, T.110, S.111, S.112, G.113, K.114, T.115, H.116, N.221, E.222, H.223, S.224, S.225, L.255, A.256, G.257
20 PLIP interactions:20 interactions with chain F- Hydrogen bonds: F:T.110, F:S.111, F:S.112, F:G.113, F:K.114, F:T.115, F:T.115, F:T.115, F:H.116, F:H.116, F:N.221, F:H.223, F:S.225, F:S.225, F:L.255, F:G.257
- Salt bridges: F:K.114, F:K.114
- pi-Stacking: F:H.116, F:H.116
ATP.9: 19 residues within 4Å:- Chain I: R.37, R.39, P.40, Q.109, T.110, S.111, S.112, G.113, K.114, T.115, H.116, N.221, E.222, H.223, S.224, S.225, L.255, A.256, G.257
20 PLIP interactions:20 interactions with chain I- Hydrogen bonds: I:T.110, I:S.111, I:S.112, I:G.113, I:K.114, I:T.115, I:T.115, I:T.115, I:H.116, I:H.116, I:N.221, I:H.223, I:S.225, I:S.225, I:L.255, I:G.257
- Salt bridges: I:K.114, I:K.114
- pi-Stacking: I:H.116, I:H.116
ATP.12: 19 residues within 4Å:- Chain L: R.37, R.39, P.40, Q.109, T.110, S.111, S.112, G.113, K.114, T.115, H.116, N.221, E.222, H.223, S.224, S.225, L.255, A.256, G.257
20 PLIP interactions:20 interactions with chain L- Hydrogen bonds: L:T.110, L:S.111, L:S.112, L:G.113, L:K.114, L:T.115, L:T.115, L:T.115, L:H.116, L:H.116, L:N.221, L:H.223, L:S.225, L:S.225, L:L.255, L:G.257
- Salt bridges: L:K.114, L:K.114
- pi-Stacking: L:H.116, L:H.116
ATP.15: 19 residues within 4Å:- Chain O: R.37, R.39, P.40, Q.109, T.110, S.111, S.112, G.113, K.114, T.115, H.116, N.221, E.222, H.223, S.224, S.225, L.255, A.256, G.257
20 PLIP interactions:20 interactions with chain O- Hydrogen bonds: O:T.110, O:S.111, O:S.112, O:G.113, O:K.114, O:T.115, O:T.115, O:T.115, O:H.116, O:H.116, O:N.221, O:H.223, O:S.225, O:S.225, O:L.255, O:G.257
- Salt bridges: O:K.114, O:K.114
- pi-Stacking: O:H.116, O:H.116
ATP.18: 19 residues within 4Å:- Chain R: R.37, R.39, P.40, Q.109, T.110, S.111, S.112, G.113, K.114, T.115, H.116, N.221, E.222, H.223, S.224, S.225, L.255, A.256, G.257
20 PLIP interactions:20 interactions with chain R- Hydrogen bonds: R:T.110, R:S.111, R:S.112, R:G.113, R:K.114, R:T.115, R:T.115, R:T.115, R:H.116, R:H.116, R:N.221, R:H.223, R:S.225, R:S.225, R:L.255, R:G.257
- Salt bridges: R:K.114, R:K.114
- pi-Stacking: R:H.116, R:H.116
ATP.21: 19 residues within 4Å:- Chain U: R.37, R.39, P.40, Q.109, T.110, S.111, S.112, G.113, K.114, T.115, H.116, N.221, E.222, H.223, S.224, S.225, L.255, A.256, G.257
20 PLIP interactions:20 interactions with chain U- Hydrogen bonds: U:T.110, U:S.111, U:S.112, U:G.113, U:K.114, U:T.115, U:T.115, U:T.115, U:H.116, U:H.116, U:N.221, U:H.223, U:S.225, U:S.225, U:L.255, U:G.257
- Salt bridges: U:K.114, U:K.114
- pi-Stacking: U:H.116, U:H.116
ATP.24: 19 residues within 4Å:- Chain X: R.37, R.39, P.40, Q.109, T.110, S.111, S.112, G.113, K.114, T.115, H.116, N.221, E.222, H.223, S.224, S.225, L.255, A.256, G.257
20 PLIP interactions:20 interactions with chain X- Hydrogen bonds: X:T.110, X:S.111, X:S.112, X:G.113, X:K.114, X:T.115, X:T.115, X:T.115, X:H.116, X:H.116, X:N.221, X:H.223, X:S.225, X:S.225, X:L.255, X:G.257
- Salt bridges: X:K.114, X:K.114
- pi-Stacking: X:H.116, X:H.116
ATP.27: 19 residues within 4Å:- Chain 0: R.37, R.39, P.40, Q.109, T.110, S.111, S.112, G.113, K.114, T.115, H.116, N.221, E.222, H.223, S.224, S.225, L.255, A.256, G.257
20 PLIP interactions:20 interactions with chain 0- Hydrogen bonds: 0:T.110, 0:S.111, 0:S.112, 0:G.113, 0:K.114, 0:T.115, 0:T.115, 0:T.115, 0:H.116, 0:H.116, 0:N.221, 0:H.223, 0:S.225, 0:S.225, 0:L.255, 0:G.257
- Salt bridges: 0:K.114, 0:K.114
- pi-Stacking: 0:H.116, 0:H.116
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Diao, L. et al., Cryo-EM of alpha-tubulin isotype-containing microtubules revealed a contracted structure of alpha 4A/ beta 2A microtubules. Acta Biochim.Biophys.Sin. (2023)
- Release Date
- 2023-08-16
- Peptides
- Tubulin alpha-1A chain: ADGJMPSVY
Tubulin beta-2A chain: BEHKNQTWZ
Kinesin-1 heavy chain: CFILORUX0 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
ID
AG
BJ
CM
DP
ES
FV
GY
HB
QE
JH
KK
LN
MQ
NT
OW
PZ
RC
YF
SI
TL
UO
VR
WU
XX
Z0
a
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-9-9-9-mer
- Ligands
- 9 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Covalent)
- 9 x G2P: PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER(Non-covalent)
- 9 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Diao, L. et al., Cryo-EM of alpha-tubulin isotype-containing microtubules revealed a contracted structure of alpha 4A/ beta 2A microtubules. Acta Biochim.Biophys.Sin. (2023)
- Release Date
- 2023-08-16
- Peptides
- Tubulin alpha-1A chain: ADGJMPSVY
Tubulin beta-2A chain: BEHKNQTWZ
Kinesin-1 heavy chain: CFILORUX0 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
ID
AG
BJ
CM
DP
ES
FV
GY
HB
QE
JH
KK
LN
MQ
NT
OW
PZ
RC
YF
SI
TL
UO
VR
WU
XX
Z0
a