SMTL ID : 8iya.2 (2 other biounits)

Complex of SETDB1-derived peptide bound to UBE2E1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.43 Å

Oligo State

monomer

Ligands

1 x CYS- GLU- GLY- TYR- GLU- SER: Histone-lysine N-methyltransferase SETDB1(Non-covalent)

CYS-GLU-GLY-TYR-GLU-SER.1: 10 residues within 4Å: Chain A: N.102, S.103, V.106, C.108, K.113, P.141, L.142, V.143, G.144, S.145 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.102, A:S.103, A:L.142, A:G.144, A:S.145

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: K.89, V.90, T.91, V.106, I.107, L.112, K.113 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.90, A:V.90, A:I.107 Salt bridges: A:K.89, A:K.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, X. et al., Structure-guided engineering enables E3 ligase-free and versatile protein ubiquitination via UBE2E1. Nat Commun (2024)

Release Date

2024-01-03

Peptides

Ubiquitin-conjugating enzyme E2 E1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ubiquitin-conjugating enzyme E2 E1

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