SMTL ID : 8iyf.1

Structure of VldE-H182A in complex with GDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 14 residues within 4Å: Chain A: R.290, K.295, R.321, N.323, D.360, N.361, D.362, V.363, T.366, D.383, N.386, L.387, S.388, E.391 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:R.321, A:N.323, A:N.361, A:N.361, A:D.362, A:T.366, A:N.386, A:N.386, A:L.387, A:S.388, A:E.391 Water bridges: A:R.290, A:V.363, A:V.363, A:N.386, A:S.388 Salt bridges: A:R.290, A:K.295, A:K.295 GDP.2: 14 residues within 4Å: Chain B: R.290, K.295, R.321, N.323, D.360, N.361, D.362, V.363, T.366, D.383, N.386, L.387, S.388, E.391 18 PLIP interactions: 18 interactions with chain B Hydrogen bonds: B:R.321, B:N.323, B:N.361, B:N.361, B:D.362, B:T.366, B:N.386, B:L.387, B:S.388, B:E.391 Water bridges: B:N.361, B:D.383, B:D.383, B:N.386, B:S.388 Salt bridges: B:R.290, B:K.295, B:K.295

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wong, C.P. et al., Structure of VldE-H182A in complex with GDP. To Be Published

Release Date

2024-04-10

Peptides

Validamine 7-phosphate valienyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Validamine 7-phosphate valienyltransferase