SMTL ID : 8iyx.1

Cryo-EM structure of the GPR34 receptor in complex with the antagonist YL-365

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x S6R: 1-[4-(3-chlorophenyl)phenyl]carbonyl-4-[2-(4-phenylmethoxyphenyl)ethanoylamino]piperidine-4-carboxylic acid(Non-covalent)

S6R.1: 14 residues within 4Å: Chain A: T.132, Y.135, Y.139, I.140, I.143, F.147, V.174, I.177, L.181, A.182, G.185, F.186, M.189, L.223 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:T.132, A:Y.135, A:Y.135, A:Y.139, A:I.143, A:F.147, A:V.174, A:I.177, A:L.181, A:L.181

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xia, A. et al., Cryo-EM structures of human GPR34 enable the identification of selective antagonists. Proc.Natl.Acad.Sci.USA (2023)

Release Date

2024-03-20

Peptides

Probable G-protein coupled receptor 34,Probable G-protein coupled receptor 34,YL-365: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Membrane

We predict this structure to be a membrane protein.
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Probable G-protein coupled receptor 34,Probable G-protein coupled receptor 34,YL-365