SMTL ID : 8izc.1

Human CK1 Delta Kinase structure bound to Inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-dimer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.175, Q.211, G.212, K.221 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:G.212 Water bridges: A:R.175, A:R.175, A:R.175, A:W.210, A:Q.211, A:Q.211, A:L.213 Salt bridges: A:R.175, A:K.221 SO4.2: 3 residues within 4Å: Chain A: T.217, K.218, R.219 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.218, A:R.219 Water bridges: A:A.216 Salt bridges: A:R.219 SO4.3: 4 residues within 4Å: Chain A: R.124, K.151, K.168, E.186 7 PLIP interactions: 7 interactions with chain A Water bridges: A:R.124, A:L.149, A:K.151, A:K.151 Salt bridges: A:R.124, A:K.151, A:K.168 SO4.5: 4 residues within 4Å: Chain B: R.175, Q.211, G.212, K.221 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:G.212 Water bridges: B:R.175, B:R.175, B:Q.211, B:Q.211, B:L.213 Salt bridges: B:R.175, B:K.221 SO4.6: 4 residues within 4Å: Chain B: R.124, K.151, K.168, E.186 4 PLIP interactions: 4 interactions with chain B Water bridges: B:R.124 Salt bridges: B:R.124, B:K.151, B:K.168

2 x S93: ~{N}5-~{tert}-butyl-2-(3-chloranyl-4-fluoranyl-phenyl)-6,7-dihydro-4~{H}-pyrazolo[1,5-a]pyrazine-3,5-dicarboxamide(Non-covalent)

S93.4: 22 residues within 4Å: Chain A: R.10, I.12, I.20, L.22, A.33, I.34, K.35, Y.53, M.77, M.79, E.80, L.81, L.82, G.83, P.84, S.85, D.88, L.132, L.135, I.145 Chain B: T.24, E.31 11 PLIP interactions: 10 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:I.20, A:I.20, A:A.33, A:P.84, A:L.132, A:I.145, B:T.24 Hydrogen bonds: A:E.80, A:L.82, A:L.82 Halogen bonds: A:M.77 S93.7: 22 residues within 4Å: Chain A: T.24, E.31 Chain B: R.10, I.12, I.20, L.22, A.33, I.34, K.35, Y.53, M.77, M.79, E.80, L.81, L.82, G.83, P.84, S.85, D.88, L.132, L.135, I.145 13 PLIP interactions: 12 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:I.20, B:I.20, B:L.22, B:A.33, B:L.81, B:P.84, B:L.132, B:I.145, A:T.24 Hydrogen bonds: B:E.80, B:L.82, B:L.82 Halogen bonds: B:M.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Velaparthi, U. et al., The Discovery of BMS-986164, a Potent, Selective and Orally Efficacious CK1d/e/a Inhibitor from Pyrazolo-Piperazine Chemotype. To Be Published

Release Date

2024-04-10

Peptides

Casein kinase I isoform delta: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Casein kinase I isoform delta