SMTL ID : 8j0e.1

GK monomer complexes with catalytic intermediate

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

1 x TKC: (2~{R})-5-[[[[(2~{R},3~{S},4~{S},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-2-azanyl-5-oxidanylidene-pentanoic acid

TKC.1: 27 residues within 4Å: Chain C: K.20, G.22, T.23, A.24, S.60, G.61, A.62, V.63, D.157, N.176, D.177, D.197, V.198, G.200, Y.202, G.204, P.206, F.228, G.229, E.230, K.231, R.236, G.237, G.238, M.239, K.242 Ligands: MG.2 23 PLIP interactions: 23 interactions with chain C Hydrophobic interactions: C:T.23, C:N.176 Hydrogen bonds: C:T.23, C:T.23, C:A.24, C:G.61, C:A.62, C:V.63, C:D.157, C:D.157, C:N.176, C:Y.202, C:Y.202, C:G.229, C:R.236, C:R.236, C:G.237, C:M.239 Salt bridges: C:K.20, C:K.20, C:K.20, C:K.231, C:K.242

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain C: D.177, G.237 Ligands: TKC.1 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.177, C:G.237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, T. et al., GK monomer complexes with catalytic intermediate. To Be Published

Release Date

2024-04-17

Peptides

Delta-1-pyrroline-5-carboxylate synthase B: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
A

C
B

D
E

Delta-1-pyrroline-5-carboxylate synthase B

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