SMTL ID : 8j12.1

Cryo-EM structure of the AsCas12f-sgRNA-target DNA ternary complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

7 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 1 residues within 4Å: Chain A: D.151 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.151, A:D.151 MG.3: 1 residues within 4Å: Chain B: R.224 No protein-ligand interaction detected (PLIP) MG.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.6: 1 residues within 4Å: Chain E: U.200 No protein-ligand interaction detected (PLIP) MG.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.9: 1 residues within 4Å: Chain E: A.99 No protein-ligand interaction detected (PLIP)

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.382, C.385, C.401, C.404 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.382, A:C.385, A:C.401, A:C.404 ZN.4: 5 residues within 4Å: Chain B: C.382, E.384, C.385, C.401, C.404 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.382, B:C.385, B:C.401, B:C.404

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hino, T. et al., An AsCas12f-based compact genome-editing tool derived by deep mutational scanning and structural analysis. Cell (2023)

Release Date

2023-09-27

Peptides

Transposase IS605 OrfB C-terminal domain-containing protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Transposase IS605 OrfB C-terminal domain-containing protein