SMTL ID : 8j1b.1

GSK101 and Ruthenium Red bound state of mTRPV4

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x XQ3: N-[(2S)-1-{4-[N-(2,4-dichlorobenzene-1-sulfonyl)-L-seryl]piperazin-1-yl}-4-methyl-1-oxopentan-2-yl]-1-benzothiophene-2-carboxamide(Non-covalent)

XQ3.1: 17 residues within 4Å: Chain A: S.369, N.373, V.374, S.376, Y.377, A.380, T.419, F.423, T.426, F.448, Q.449, Y.452, Y.490, F.491, D.642, S.646, F.647 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:N.373, A:A.380, A:T.419, A:F.423, A:Y.490, A:F.491, A:F.647 Hydrogen bonds: A:N.373, A:N.373, A:F.448, A:Q.449, A:Y.452 pi-Stacking: A:Y.377 XQ3.3: 17 residues within 4Å: Chain B: S.369, N.373, V.374, S.376, Y.377, A.380, T.419, F.423, T.426, F.448, Q.449, Y.452, Y.490, F.491, D.642, S.646, F.647 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:N.373, B:A.380, B:T.419, B:F.423, B:Y.490, B:F.491, B:F.647 Hydrogen bonds: B:N.373, B:N.373, B:F.448, B:Q.449, B:Y.452 pi-Stacking: B:Y.377 XQ3.4: 17 residues within 4Å: Chain C: S.369, N.373, V.374, S.376, Y.377, A.380, T.419, F.423, T.426, F.448, Q.449, Y.452, Y.490, F.491, D.642, S.646, F.647 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:N.373, C:A.380, C:T.419, C:F.423, C:Y.490, C:F.491, C:F.647 Hydrogen bonds: C:N.373, C:N.373, C:F.448, C:Q.449, C:Y.452 pi-Stacking: C:Y.377 XQ3.5: 17 residues within 4Å: Chain D: S.369, N.373, V.374, S.376, Y.377, A.380, T.419, F.423, T.426, F.448, Q.449, Y.452, Y.490, F.491, D.642, S.646, F.647 13 PLIP interactions: 13 interactions with chain D Hydrophobic interactions: D:N.373, D:A.380, D:T.419, D:F.423, D:Y.490, D:F.491, D:F.647 Hydrogen bonds: D:N.373, D:N.373, D:F.448, D:Q.449, D:Y.452 pi-Stacking: D:Y.377

1 x R2R: ruthenium(6+) azanide pentaamino(oxido)ruthenium (1/4/2)(Non-covalent)

R2R.2: 16 residues within 4Å: Chain A: M.579, G.580, D.581, L.582 Chain B: M.579, G.580, D.581, L.582 Chain C: M.579, G.580, D.581, L.582 Chain D: M.579, G.580, D.581, L.582 15 PLIP interactions: 3 interactions with chain D, 4 interactions with chain B, 4 interactions with chain A, 4 interactions with chain C Hydrogen bonds: D:D.581, D:L.582, D:L.582, B:M.579, B:D.581, B:L.582, B:L.582, A:M.579, A:D.581, A:L.582, A:L.582, C:M.579, C:D.581, C:L.582, C:L.582

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhen, W. et al., Structural basis of ligand activation and inhibition in a mammalian TRPV4 ion channel. Cell Discov (2023)

Release Date

2023-08-09

Peptides

Transient receptor potential cation channel subfamily V member 4: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Transient receptor potential cation channel subfamily V member 4

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