SMTL ID : 8j1k.1

co-crystal structure of non-carboxylic acid inhibitor with PHD2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

monomer

Ligands

1 x SY6: N-[(6-cyanopyridin-3-yl)methyl]-5-oxidanyl-2-[(3R)-3-oxidanylpyrrolidin-1-yl]-1,7-naphthyridine-6-carboxamide

SY6.1: 15 residues within 4Å: Chain A: M.111, Y.115, H.125, D.127, R.134, Y.141, N.143, P.170, H.186, V.188, R.195, Y.196, A.197, W.201 Ligands: MN.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.188, A:W.201 Hydrogen bonds: A:N.143 pi-Stacking: A:Y.115

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 4 residues within 4Å: Chain A: H.125, D.127, H.186 Ligands: SY6.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.125, A:D.127, A:H.186, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, J. et al., co-crystal structure of non-carboxylic acid inhibitor with PHD2. To Be Published

Release Date

2024-04-17

Peptides

Egl nine homolog 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Egl nine homolog 1