SMTL ID : 8j1m.1

Crystal structure of a crosslinked variant of BbZIP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

3 x CD: CADMIUM ION(Non-covalent)

CD.1: 5 residues within 4Å: Chain A: N.158, E.161, D.188, E.191, E.220 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.161, A:D.188, A:E.191, A:E.220, H2O.1 CD.2: 5 residues within 4Å: Chain A: H.157, E.161, Q.187, E.191 Ligands: CL.5 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.157, A:E.161, A:E.191, A:E.191 CD.3: 4 residues within 4Å: Chain A: D.124, H.129, H.131, E.256 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.124, A:H.129, A:H.131, A:E.256, H2O.1

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain A: R.61, R.200, P.205, I.206 Ligand excluded by PLIP CL.5: 8 residues within 4Å: Chain A: C.75, A.76, M.79, H.157, E.161, Q.187, E.191 Ligands: CD.2 Ligand excluded by PLIP

5 x MPG: [(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate(Non-covalent)

MPG.6: 7 residues within 4Å: Chain A: N.145, V.147, V.212, A.215, M.219, L.222 Ligands: MPG.9 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.147, A:V.212, A:A.215, A:L.222 MPG.7: 4 residues within 4Å: Chain A: I.24, L.28, T.29, G.30 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.28, A:L.28 Hydrogen bonds: A:G.30 MPG.8: 10 residues within 4Å: Chain A: L.9, S.12, V.16, L.19, L.118, L.119, G.122, Y.125, F.126, P.139 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.16, A:L.19, A:L.118, A:Y.125, A:Y.125, A:Y.125, A:Y.125, A:F.126 MPG.9: 8 residues within 4Å: Chain A: N.145, V.147, L.204, R.208, L.211, V.214, A.215 Ligands: MPG.6 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.204, A:R.208, A:L.211, A:V.214, A:A.215 Hydrogen bonds: A:N.145 MPG.10: 2 residues within 4Å: Chain A: L.113, S.254 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.113

1 x HG: MERCURY (II) ION(Non-covalent)

HG.11: 5 residues within 4Å: Chain A: M.71, C.75, P.190, E.191, C.194 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.75, A:C.194, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Y. et al., Molecular insights into substrate translocation in an elevator-type metal transporter. Biorxiv (2024)

Release Date

2024-11-13

Peptides

Putative membrane protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Putative membrane protein