SMTL ID : 8j39.1

Crystal structure of SARS-Cov-2 main protease V186F mutant in complex with PF00835231

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.66 Å

Oligo State

homo-dimer

Ligands

2 x V2M: N-[(2S)-1-({(2S,3S)-3,4-dihydroxy-1-[(3S)-2-oxopyrrolidin-3-yl]butan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-4-methoxy-1H-indole-2-carboxamide(Covalent)(Non-covalent)

V2M.1: 19 residues within 4Å: Chain A: L.26, H.40, M.48, F.139, N.141, G.142, S.143, C.144, H.162, H.163, M.164, E.165, P.167, H.171, D.186, R.187, Q.188, T.189, A.190 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:D.186, A:Q.188, A:A.190 Hydrogen bonds: A:F.139, A:G.142, A:S.143, A:S.143, A:C.144, A:H.163, A:E.165, A:E.165, A:Q.188 V2M.2: 18 residues within 4Å: Chain B: L.26, H.40, F.139, L.140, N.141, G.142, S.143, C.144, H.162, H.163, M.164, E.165, P.167, H.171, D.186, Q.188, T.189, A.190 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:D.186, B:A.190 Hydrogen bonds: B:G.142, B:S.143, B:C.144, B:H.163, B:E.165, B:E.165, B:E.165, B:E.165, B:Q.188, B:Q.188

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, X.L. et al., Crystal structure of SARS-Cov-2 main protease V186F mutant in complex with PF00835231. To Be Published

Release Date

2024-04-17

Peptides

3C-like proteinase nsp5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3C-like proteinase nsp5