SMTL ID : 8j3z.1

Cryo-EM structure of ATP-U46619-bound ABCC4

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 16 residues within 4Å: Chain A: T.533, S.536, D.814, Y.1050, V.1057, R.1076, T.1077, G.1078, A.1079, G.1080, K.1081, S.1082, S.1083, Q.1202, H.1233 Ligands: MG.2 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:D.814, A:D.814, A:G.1078, A:G.1078, A:A.1079, A:G.1080, A:G.1080, A:K.1081, A:S.1082, A:S.1083, A:Q.1202 Salt bridges: A:K.1081, A:K.1081, A:H.1233 ATP.5: 15 residues within 4Å: Chain A: W.419, P.446, V.447, G.448, A.449, G.450, K.451, S.452, S.453, Q.480, H.592, S.1175, V.1179, N.1206 Ligands: MG.4 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.448, A:G.448, A:G.450, A:K.451, A:S.452, A:S.453, A:N.1206 Salt bridges: A:K.451, A:K.451 pi-Stacking: A:W.419, A:W.419, A:W.419

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: S.1082, Q.1122, D.1201 Ligands: ATP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:S.1082 MG.4: 4 residues within 4Å: Chain A: S.452, Q.480, D.559 Ligands: ATP.5 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:S.452

1 x PUC: (5Z)-7-{(1R,4S,5S,6R)-6-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-2-oxabicyclo[2.2.1]hept-5-yl}hept-5-enoic acid(Non-covalent)

PUC.3: 14 residues within 4Å: Chain A: H.152, F.156, F.211, L.363, L.367, F.368, S.371, R.375, D.842, Q.845, T.846, G.991, Q.994, W.995 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.211, A:F.211, A:L.363, A:L.367, A:F.368, A:T.846, A:W.995, A:W.995

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Y. et al., Cryo-EM structure ofABCC4. Nat Cardiovasc Res (2023)

Release Date

2023-05-24

Peptides

ATP-binding cassette sub-family C member 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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ATP-binding cassette sub-family C member 4

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