SMTL ID : 8j4b.1

Crystal structure of OY phytoplasma SAP05 in complex with AtSPL13

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-2-2-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain C: C.5, C.10, C.27, H.30 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.5, C:C.10, C:C.27, C:H.30 ZN.2: 4 residues within 4Å: Chain C: C.46, C.49, H.53, C.65 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.46, C:C.49, C:H.53, C:C.65 ZN.3: 4 residues within 4Å: Chain D: C.5, C.10, C.27, H.30 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.5, D:C.10, D:C.27, D:H.30 ZN.4: 4 residues within 4Å: Chain D: C.46, C.49, H.53, C.65 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.46, D:C.49, D:H.53, D:C.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yan, X. et al., Molecular basis of SAP05-mediated ubiquitin-independent proteasomal degradation of transcription factors. Nat Commun (2024)

Release Date

2024-02-28

Peptides

Sequence-variable mosaic (SVM) signal sequence domain-containing protein: AB
Squamosa promoter-binding-like protein 13A: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
B

D
D

Sequence-variable mosaic (SVM) signal sequence domain-containing protein

Squamosa promoter-binding-like protein 13A

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