SMTL ID : 8j4c.1

YeeE(TsuA)-YeeD(TsuB) complex for thiosulfate uptake

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.34 Å

Oligo State

homo-dimer

Ligands

2 x THJ: THIOSULFATE(Non-covalent)

THJ.1: 10 residues within 4Å: Chain A: K.67, G.220, I.221, T.222, G.223, E.241, G.291, G.292, C.293, G.296 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.221, A:T.222, A:G.223, A:G.291 Salt bridges: A:K.67 THJ.13: 9 residues within 4Å: Chain B: K.67, G.220, I.221, T.222, G.223, E.241, G.292, C.293, G.296 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.223 Salt bridges: B:K.67

21 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.2: 8 residues within 4Å: Chain A: L.11, I.14, R.18, K.189, F.190, L.201, L.205 Ligands: OLC.12 Ligand excluded by PLIP OLC.3: 9 residues within 4Å: Chain A: L.6, L.7, F.10, R.18, V.254, A.255, V.258, A.259 Ligands: OLC.12 Ligand excluded by PLIP OLC.4: 7 residues within 4Å: Chain A: G.100, I.249, G.253, A.257, F.262 Ligands: OLC.6, OLC.11 Ligand excluded by PLIP OLC.5: 5 residues within 4Å: Chain A: L.274 Chain B: F.262, K.263, L.264 Ligands: OLC.21 Ligand excluded by PLIP OLC.6: 9 residues within 4Å: Chain A: L.228, G.231, F.232, N.235, S.236, L.238 Chain B: A.124 Ligands: OLC.4, OLC.11 Ligand excluded by PLIP OLC.7: 7 residues within 4Å: Chain A: L.161, L.168, V.169, A.172, L.173, L.176 Ligands: OLC.9 Ligand excluded by PLIP OLC.8: 4 residues within 4Å: Chain A: I.51, I.175, F.179 Ligands: OLC.9 Ligand excluded by PLIP OLC.9: 9 residues within 4Å: Chain A: I.51, L.168, A.172, I.175, L.176, F.179, G.180 Ligands: OLC.7, OLC.8 Ligand excluded by PLIP OLC.10: 3 residues within 4Å: Chain A: L.31, T.322, W.325 Ligand excluded by PLIP OLC.11: 7 residues within 4Å: Chain A: V.99, W.107, F.262, L.264 Chain B: L.274 Ligands: OLC.4, OLC.6 Ligand excluded by PLIP OLC.12: 7 residues within 4Å: Chain A: K.189, F.190, V.197, C.198, L.201 Ligands: OLC.2, OLC.3 Ligand excluded by PLIP OLC.14: 9 residues within 4Å: Chain B: L.11, V.15, R.18, K.189, F.190, L.201, L.205 Ligands: OLC.15, OLC.18 Ligand excluded by PLIP OLC.15: 6 residues within 4Å: Chain B: F.10, V.254, V.258, A.259 Ligands: OLC.14, OLC.20 Ligand excluded by PLIP OLC.16: 3 residues within 4Å: Chain B: A.172, I.175, L.176 Ligand excluded by PLIP OLC.17: 3 residues within 4Å: Chain B: L.87, L.282, I.326 Ligand excluded by PLIP OLC.18: 5 residues within 4Å: Chain B: K.189, I.194, C.198, L.201 Ligands: OLC.14 Ligand excluded by PLIP OLC.19: 6 residues within 4Å: Chain B: I.76, F.79, L.83, W.127, W.128, W.131 Ligand excluded by PLIP OLC.20: 5 residues within 4Å: Chain B: L.6, L.250 Ligands: OLC.15, OLC.21, OLC.22 Ligand excluded by PLIP OLC.21: 8 residues within 4Å: Chain B: V.246, I.249, G.253, A.257, F.262 Ligands: OLC.5, OLC.20, OLC.22 Ligand excluded by PLIP OLC.22: 10 residues within 4Å: Chain A: A.124 Chain B: L.228, G.231, F.232, N.235, S.236, P.237, L.238 Ligands: OLC.20, OLC.21 Ligand excluded by PLIP OLC.23: 3 residues within 4Å: Chain B: Q.58, Y.146, W.164 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ikei, M. et al., Structure and function of YeeE-YeeD complex for sophisticated thiosulfate uptake. To Be Published

Release Date

2024-03-27

Peptides

Spirochaeta thermophila YeeE(TsuA)-YeeD(TsuB),UPF0033 domain-containing protein, SirA-like domain-containing protein (chimera): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Membrane

We predict this structure to be a membrane protein.
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Spirochaeta thermophila YeeE(TsuA)-YeeD(TsuB),UPF0033 domain-containing protein, SirA-like domain-containing protein (chimera)